Open metadata markup language - odML -

data model for storing arbitrary metadata

odML

odml

odML (open metadata Markup Language) is a file format for storing arbitrary metadata. The underlying data model offers a way to store metadata in a structured human- and machine-readable way. Well organized metadata management is a key component to guarantee reproducibility of experiments and to track provenance of performed analyses.

python-odml is the python library for reading and writing odml metadata files. It is a registered research resource with the RRID:SCR_001376 .

APIs

Viewer/Editor

Terminologies

odML facilitates and encourages standardization by providing terminologies. An odml-file can be based on such a terminology. In that case one does not need to provide definitions since they are part of the linked terminology.


Getting started

Installation

python-odml is most conveniently installed via pip.

pip install odml

Tutorial and examples

Python convenience scripts

The Python installation features two convenience commandline scripts.

Both scripts provide detailed usage descriptions by adding the help flag to the command.

odmlconversion -h
odmltordf -h

Support

If you experience problems using odml feel free to join our IRC channel #gnode at FreeNode or write an email to dev@g-node.org. If you find a bug please report it using the project issue tracker.

License

This project is open source published under an MIT license-like see license file for details.


Citing

If you use odml, it would be much appreciated if you would cite it in publications with its identifier RRID:SCR_001376 and/or the reference:

Grewe J., Wachtler T., and Benda J. (2011). A bottom-up approach to data annotation in neurophysiology. Front. Neuroinform. 5:16, doi:10.3389/fninf.2011.00016

Referenced By